NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicMicro_10036866

Scaffold PicMicro_10036866


Overview

Basic Information
Taxon OID3300003702 Open in IMG/M
Scaffold IDPicMicro_10036866 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9043
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)18.55Long. (o)81.716667Alt. (m)Depth (m)5000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029898Metagenome187N
F033643Metagenome / Metatranscriptome177Y
F049935Metagenome / Metatranscriptome146N
F096037Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
PicMicro_100368661F049935N/AMQTDIDFEFWDAQIKHFIGIVKSDSASGRNKKVAKTHLIEIQSRLKRDVRDLNKYIKELEAQL*
PicMicro_1003686614F029898N/AVGQIGYTIDSVMRKIIEMIRKAIKKNPVRTQELTYQREYDGAVKNYFVNIFEDWADYYVAYTYDKHGANCGVKRFNKGNIQKMKPSKRNFALVTA*
PicMicro_1003686615F033643GGAMFSASEIYPGFNITFANGWEISVQWGRDHYCANRDNSNKESRTSTTAEVAIFAPDKDGFPREWWSYDEDINRVIEQPEETYVNGHLTTDQVANIIAIISQKSA*
PicMicro_1003686618F096037N/AMKTTVYAWGAQVSNVLHIYAGMTTQKDLGIRLNGVKEIMVGTADSWFGGPQDSAIGAYNLDLIYADSSQNYSRHKEQRAINAGWAVEQKYRNASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDTNLNGRVFQAVESWIKEKVQEEPNLKRKFEAALIAKQQKQALIANITRVLGLKPVLV*
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