Scaffold PicMicro

Basic Information
Taxon OID	3300003702 Open in IMG/M
Scaffold ID	PicMicro_10047330 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003702 Open in IMG/M

Scaffold ID

PicMicro_10047330 Open in IMG/M

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5040
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5040

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	18.55	Long. (^o)	81.716667	Alt. (m)	Depth (m)	5000
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

18.55

Long. (^o)

81.716667

Alt. (m)

Depth (m)

5000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001493	Metagenome	683	Y
F006423	Metagenome	373	Y
F006919	Metagenome	362	Y
F078839	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1004733010	F006919	GAG	MKSFKQHLKEFAIRSTSDLVFEVGGQGLASSALKIPISGPMFKRIWPDTVRSTVFHTTDLDGLKALKKIEGGKKSISAFFSMMARYMESGIATGGGIVAEMDADVIVSARDDIMSEVDKGGRRWVMMSWFENQTRDRSKFGKVENDLNGLIKQLVLKHLGPILGKEDVKKLSEFDLWSNMKRHLKGDGKALSLVIKDYFDGVERIIKKNSEVMGNIFYGYAKSKRMTDNAWDEQIVNNIKVKKIHLITFTQTPNEKEEEIIEYVDSTNWPLKTWDASIDLEIYTRQVVAKEIGRTIK*
PicMicro_1004733011	F000245	AGGAG	MKTFKQFDEGSFDASDKKMDAFVVKEIKKRKLATFPVNATDDYTIKKGKPAFKFPSPSGSMMIHVWLRKMLPSKGQPKGMMAFNYQLEDK*
PicMicro_100473302	F006423	N/A	MKTFKQHLNEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATGGQSILSTVDFKKLYKR*
PicMicro_100473303	F001493	N/A	MKSFKGYLEEKFQDWKSGSGPAWTESLSTMLFDLPRAGLVDLKIPLSPSIMKRVWPKSVRSKVFHLTDLDGVYKLTKLGKKKSISAFYNIDDHMISSGIKTEGGYVVELEGDVLAASPDDISSQPDKSGRRWITFSSLMNPSTAADPGLGGKTQLRGIETSLQNLLVKILQDNGKDVDVATPTNMIGLEWSGLGMATGGKEKSIIIKDYIDGMEKIMKQYSKPLRSVLTDYTKKRTLDPDPDSGDVAMWDELVVNNFTIIKVHVGSEYGPDFEDPAVVDRFSKYFDKLGVSYQLWQDEGDMADYIARAV*
PicMicro_100473307	F078839	GGA	MTEEKLISNLVLISFTCLWFIVLFMFGLLVYQSVTHQDQIDELIKSNAAVTALWMEEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicMicro_10047330

Overview

Ecosystem & Geography

Associated Families

Sequences