Scaffold Ga0055539_1014958

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0055539_1014958

Scaffold Ga0055539_1014958

Overview

Basic Information
Taxon OID	3300003752 Open in IMG/M
Scaffold ID	Ga0055539_1014958 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	944
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.6667	Long. (^o)	-78.5097	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035339	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055539_10149582	F035339	GGAG	LAAAPLTLAQLRRDRLAIWLWLPIGGFALFAIIAGWRHVAGEPPQRLYMVLDIVWIAVTFSLIARRTTRRCPRCNHRWLRSFPWMSMKKIECGVCGHEMPEH*

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