Scaffold Ga0055535_1001877

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0055535_1001877

Scaffold Ga0055535_1001877

Overview

Basic Information
Taxon OID	3300003761 Open in IMG/M
Scaffold ID	Ga0055535_1001877 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8896
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.6667	Long. (^o)	-78.5097	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049749	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055535_10018773	F049749	GAGG	MKFFGRKRASVMLVRAWCSPFGEDGPAGELLALVDQVLAAIAAKPLEGAINHGDVQPMSSLRRALAKMKPAQLDTLTVQDESGDVICSFGAEGASVGDRSRAFEIFALLPPAAEAQQDKLLRMLLGYGLHYGYARSLGPDFNPLSEVRVKRGFFDTAIQVDGGRADWLVPEMDVRAGAVRGVYPANVFSAIGLARLAGSGLRLPPSAPTLGETLWRPSAAERAEILRLNPTYRDYLHFGDA*

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