NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007850_1000344

Scaffold Ga0007850_1000344


Overview

Basic Information
Taxon OID3300003783 Open in IMG/M
Scaffold IDGa0007850_1000344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4793
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040411Metagenome161N
F055534Metagenome138Y
F081067Metagenome / Metatranscriptome114Y
F087091Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0007850_100034413F055534GGAMREHYNDEEREAARILDLVRMGDKNIPRSVINWALWCLGDAVGQ*
Ga0007850_100034415F087091AGGAMILSNSYPTEVYVSDMGYFVIKQDCFECGHQTQFLFTPDQTKLLFNLLPDFLKEQQEKWTGLHSPHESTNDE*
Ga0007850_10003446F040411AGGAGGMTEEQILAEMEKIKEAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*
Ga0007850_10003448F081067AGAAGMTRFTEKYVRSDNQWVKITRDNVQRTFTFARGYKNEFKAHEISTLSFKWVSNWTEALEKANKTIATFA*
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