NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007851_100037

Scaffold Ga0007851_100037


Overview

Basic Information
Taxon OID3300003785 Open in IMG/M
Scaffold IDGa0007851_100037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10454
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F011761Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0007851_10003713F002260AGGAGMSVPYQRISNATVQDIKFYDPAAYRRAEALNTDWEPYFRVGSQEWLYKLEFGWWNKYCDTVLGAYYYANLPNGALISSFNPSLLIKSDQTLIRLDTFGAVLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWIKALELMNFYNLYGNSPNGPTTKLEENWTADVDYFNGDRRFF*
Ga0007851_10003714F011761N/AFALRAMHESLGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPAGSNVAPWNTGNATVQNPAMSQTSILASPAVATTAFDIFLGWTTSFQLAATLGAELGDSFAEKVDQRVCQAFANGTASETDGTATPVGQTTGFKPTPGNTFYPQSADGYYRVLRLGALELLPAGGNVLAGTGGFTENTVIGLIRLAKQQFKIARMTGNPVVVLDSNGIVTEATVGAVGGSGSSLTRLLAELTGGSVSGPSSGGSNLSALGNELLQTGKIENVYGVMVMFTTFLQHTTRTIAGTASTPCLVGAYFGESALFTVMKEGLQIKLGEVPGGLQNWLTGVGYFGSGVGDQRRGGAINIVQDA*
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