NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1000002

Scaffold Ga0007811_1000002


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1000002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57523
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F037052Metagenome168Y
F048010Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0007811_100000231F048010AGGAMEKELGFKKAYKMTGTPGYAGGPDQKVESGPSGSHRDNNWKKGAAQVKLKGTNKVGPDKNLNDIGGGNFY*
Ga0007811_100000276F037052GGAMTVSKYDPKMLETMIEMGRQGASQKMIWSELGISKSTADAWRKKYPDFADALDLALVHSQAYWERLMLANAENKNFNTRMVEVAVRGQFQQDYRERMDIKQDINQKVEVDFNAAVTDLIAQLKKAGEE*
Ga0007811_100000278F012096GGAGGMSSWLVGLMGLVYLAVAVEQFMKGGYGQGIMFTGYAIGNAGILLVVK*
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