NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1000064

Scaffold Ga0007811_1000064


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1000064 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15578
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F011665Metagenome / Metatranscriptome288Y
F026556Metagenome / Metatranscriptome197Y
F033308Metagenome177Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0007811_100006411F011665AGGMSNQINLSPITQFIQQLRAAELSQSKEVKIPIQQARLLSLALNEIQDKLVQDYENLYNSLKTSTDNEVVSVMLDGGDFKS*
Ga0007811_100006418F033308GGAGGMTNAKQLTDELIYRMKTTDLNKFEIKREVGPNWLPNGTVPFNISASKGIATFTVWAESIQDAEDQVSQYLERDEDE*
Ga0007811_100006421F063276AGGAMQDSTFRQNLDFYSVLLLGILLVVFAVYYNYTHPHVVVKYDCSIAEISPDYPIPVKEACRKLRAENILNKPK*
Ga0007811_100006422F070810AGAAGMKENFKITIPWHNQDNNWWNDTCADVVEVFGLPGERYTYHPRYEDMAFYFNSKKDYELCKILLSDRI*
Ga0007811_100006424F026556GGAGMTSALIKLLIGIAFIIIALAIGPIIGIWSLNTLFPQYLNIPLTWQTWLAFNILFGSSVAGKFRK*
Ga0007811_100006426F009462N/AMLWANTEHLKQLKEMTMELHESVKDTYKEMIIKEHEGFRLVLKKHEVLAPKGLFSINLEQQTLKDGEITDTATYNYFMTTEELQALAYGLTA*
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