Scaffold Ga0007811_1000438

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007811_1000438

Scaffold Ga0007811_1000438

Overview

Basic Information
Taxon OID	3300003787 Open in IMG/M
Scaffold ID	Ga0007811_1000438 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6323
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042304	Metagenome / Metatranscriptome	158	Y
F055534	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_100043813	F042304	AGGA	MSKLIATYRKVPSPTNRKKLEVYLVKHMMALCLAAPEEVEFLKAHQFI*
Ga0007811_100043818	F055534	AGGAG	MRNNYNHEELEAARILDLVRMGDDSVPWTAITWALWVLGDAVGH*

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