NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1000618

Scaffold Ga0007811_1000618


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1000618 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5425
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036080Metagenome / Metatranscriptome170Y
F043202Metagenome156Y
F053035Metagenome / Metatranscriptome141Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0007811_100061811F036080GAGGMNNQIDLESAIMVAWQTSEDIDLLYKHHGDAPRPMTEDEVATALLGIKALHDMRMEKLMDTYYRKMELDQYCTDPVKLAAREAMFPIKKKGKK*
Ga0007811_100061814F053035GGAGMVSPFELRFSIFNTAKDLMIKQHEANMAAWEVLNKTTKEAAELAPQFPTTEEIIDKAIEINTFISGQTTKELANVAKKLAGVSVIF*
Ga0007811_10006184F043202GGAVTKNSEQQSLLADKPYYVADTGHFGITIKVCFSDAAFQQALKDSKITAKHNSLDLGLAESHYIQQEGTQFAMMAIVFNYEDMAKXDALERMGIIYHEVSHTTTHVFXYIGEDESKIGDESRSYLGEHIFKQVFSIXATEDEKRANSRKRNRTASNETSEKVLGALLQMAELNNGSAGPDSVSEPKSVPRRTKNSNGGTKSKTSARVRRAG*
Ga0007811_10006188F058556AGGAMSTFIVEHEYKGYPIFETISGVEDIDTSLFDKILTMWVCDSPEEIAAVENELRKKHARSSQPA*
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