NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1001905

Scaffold Ga0007811_1001905


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1001905 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2872
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F025277Metagenome / Metatranscriptome202Y
F026556Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0007811_10019051F025277N/AMVINGRDLEERLNTIEKVLNIPERDVILEHKHPKLKELYDAYINALGKYRTFEAIKGEEDAS*
Ga0007811_10019052F009462AGGAGMQVEQLHESVKNTYKEMVIKEHAGFRLVLKKHEVISPKGLFALDLEQQHLKDGEVVDSCTYNFFMDKEELQALAFGLTA*
Ga0007811_10019054F026556GGAGGMASLTGSIVKLIFGIALILIAVIFGPIVGIWSLNTLFPVLNIPFTWQTWLAFNCLFGGTIASRLKK*
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