NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007847_100001

Scaffold Ga0007847_100001


Overview

Basic Information
Taxon OID3300003793 Open in IMG/M
Scaffold IDGa0007847_100001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105595
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)123 (76.40%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F013252Metagenome273Y
F016247Metagenome248Y
F016499Metagenome / Metatranscriptome246Y
F017424Metagenome / Metatranscriptome241Y
F048757Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0007847_100001120F013252AGGAGMAKNPQDGGELGFRKTYKMTGTPGNAGGPGEKTIDQGTSGSKRSNNAVLNQNKVKSSKVGPDKNLNDIGGGNFY*
Ga0007847_100001121F017424N/AMKDFISEIIARTRDEQAKLAETLTAGNNVNSFDDYQRLVGRFEGFKEVLGIIDEILREDEEDL*
Ga0007847_10000165F012096GAGGMSTWLIAAMGVVYFVVAIDQFMKGGIGTGIMFLGYAMGNVGLVMVAK*
Ga0007847_10000168F016499AGGTGGVVAKKSPPNKKKFTEEMAQIILELGKQGASQKSMYAAIHISKSTAAKWKEENPKFAETMSMATTYGQSYWESLMLANVENKAFNSRVAELALKGQYPEDYGQQRVDLKANIRQEVTIDFDKEIAELMEMLK*
Ga0007847_10000174F048757N/AMNLKQLLKRAGVSNNIIAEVERKAKMTTAQQEIEHQEKAAAMAKMMLNDVMPHLHSAMSKTPPSKPKKTIIIPD*
Ga0007847_10000179F016247AGGAGMSNFIVEHNYKGNYVMETITGVEDLDTSQYKDILGIWVCDSFEELQIMEKELKEMRNARPRQQA*
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