NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007846_1005779

Scaffold Ga0007846_1005779


Overview

Basic Information
Taxon OID3300003797 Open in IMG/M
Scaffold IDGa0007846_1005779 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1373
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029090Metagenome / Metatranscriptome189N
F075668Metagenome / Metatranscriptome118N
F104447Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0007846_10057792F075668N/AMSNKYSVNDVRCLVMYALNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLXEQNHSSFYNSXXXKSXRKINRLNQFYE*
Ga0007846_10057793F104447AGGAMTSTKTGYLCTTIHQLRLKXEXXDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWRLTACAKYSWK*
Ga0007846_10057794F029090N/AMKRKSKIVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFXQKANVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN*
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