NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007842_1001115

Scaffold Ga0007842_1001115


Overview

Basic Information
Taxon OID3300003798 Open in IMG/M
Scaffold IDGa0007842_1001115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2396
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027088Metagenome / Metatranscriptome195N
F082060Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0007842_10011152F027088N/AMKKLLILALLALPLISKAQLVQSPEYSWRVQICDLTYNASQQLTACPVTVFYQSTITNGGAFVSNVQSVPQTLSVDLVAQTASTVVYNGTTYTYGQALGIMNAIFAQERAAELAKASSVSAPQTTQNLSAPATTPNSK*
Ga0007842_10011153F082060N/AMIKNWKQYAEHYGYGLIASCWNAGIAALYAAFGQSAGAAVMKDVPSPTEHEIITIFAGACMLEALAYFKSNPLPVITDEKINPTTPASS*
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