Scaffold Ga0007860

Basic Information
Taxon OID	3300003800 Open in IMG/M
Scaffold ID	Ga0007860_1000003 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003800 Open in IMG/M

Scaffold ID

Ga0007860_1000003 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34646
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (32.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

34646

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (32.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F072994	Metagenome / Metatranscriptome	120	Y
F080806	Metagenome / Metatranscriptome	114	Y
F089761	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0007860_100000323	F089761	AGGA	MRYPESDFTRPSIMLLRSLVHELGEGVSKEPGGYGGLKMERKRLGDILKEHIDDPRLSDWDRDMIKGL*
Ga0007860_100000334	F048735	AGG	MEYNGLSLQPPQDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERIKMGIKLDQCGLLNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGKDTSIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPLEWDAVNRYTHKWTTRTGVALHLSGEDSPNFKLPNAEVPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYNSSVGDVFEESIAMQLVKDCVEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTERKISSLDKRTAKEAYDRRVTESWFQVHTAMSTQSLLGINVEKHTALVNELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFTFEEEQESLDILEIRDWEEKLVYSKNGVGKEVEDQDDWGYGGSSCDEDGF*
Ga0007860_100000335	F030662	N/A	MKLKNPNDAIPGGLWYQYSDDKGNTYRVNGMDLTFGRQFIQKVKSDMTNKNVAIPENLEYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPSCQRRREALNKAIG*
Ga0007860_100000340	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACNLTPNYTPQYTPDCYVCSDVITEPI*
Ga0007860_100000345	F072994	N/A	MITLTSPITISPAPVHGKPLKPTTLTSIDYSVSYDNSQQQAVAQLKGVNVGITLWSQHTTPPYSSIGQFTDADTDARLSELLNVKSGNDSIQAAILALFPQPYKQK*
Ga0007860_100000346	F080806	N/A	MHHIDTAATGAIGMTAPIAAAAISFDPTLDLELRIISMAIGIFVGLASFAKLAYDLYADHKNRKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007860_1000003

Overview

Ecosystem & Geography

Associated Families

Sequences