NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007864_1000712

Scaffold Ga0007864_1000712


Overview

Basic Information
Taxon OID3300003806 Open in IMG/M
Scaffold IDGa0007864_1000712 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4126
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F029335Metagenome / Metatranscriptome188Y
F071946Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0007864_10007122F000652AGGAGMTGFQTKRAMAKGTKTVRVETLLTQELEVPMEWEREDVFDFLAEYQSFRTAFQGVSNEDQTARIVDLGVVEEIVKEMGDEAYDD*
Ga0007864_10007123F029335AGGAGMRTISTLRNGNIYEMSITEAIEIVQAYARLNTGGDLLQATQEMHDLALCDELPTIQKVAFRRFMKDMSALFAPKETV*
Ga0007864_10007126F071946AGGAGMSGIYDVVQNPIPKTGLFATPESLDQLMEYXQRFNGQERIIAITVATMALNLAHELVEDRILSKEVFCG*
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