NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007869_1001044

Scaffold Ga0007869_1001044


Overview

Basic Information
Taxon OID3300003809 Open in IMG/M
Scaffold IDGa0007869_1001044 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4243
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037028Metagenome168Y
F053744Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0007869_10010441F053744N/AVRSDQLSMSEPSKRRGAPLRDDEPLLSVSMAAMFFDISPAALRKKEKYMYDMAGNPLKVTKTPSGARRYSLNDILKIGHALRRANKMTDRQLRLIVLRVDAFKEPVLKHRLKFRKGNNPS
Ga0007869_10010446F037028GAGGMEEKSFDAPLANYDDDSYDEVIVVEQAASKEELVKELDLSRADARELLLYFCSRFKETQGYEYNVEWVKETSILKSFRERYGIDAGYMIKILFDKHKGKINDQVMTLTAFSKGSKWIQDTLYIELQQDKIKEEKRPSSEGLMSSGLFLDRFSNG*
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