NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007879_1000361

Scaffold Ga0007879_1000361


Overview

Basic Information
Taxon OID3300003813 Open in IMG/M
Scaffold IDGa0007879_1000361 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9139
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027087Metagenome / Metatranscriptome195Y
F086513Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0007879_10003611F086513N/AIEETPTAKPAVKKFEPIEEPLYDLEGLMTDFPTAKELEKFVFDQTGIVLNLKGRSNKFKYQTAMDVLNGAKPEDYLIGNENPYLDKNDLIPVDELKKLPPRPADVVGQQCVSSFISKTFPHPDSDWASQGQKCEVVFRKYINNAITYEIIGPISTRAVGTRVNKFGKEVPEKYTWVDPRTGEQVIRGANGVVTPVGTRLKSAMQRQKINKSDYWSVWIDREFVLSDSSTSMDNPWGTQL*
Ga0007879_10003614F027087GGAVNQNQLIQDVKILQKVNATHREAFIAKYPGQVEHCLRLTMERLQAGLDKRDGVDVSNPETWRMSTLELXELANTAYLLNEIRKGF*
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