NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007878_1007092

Scaffold Ga0007878_1007092


Overview

Basic Information
Taxon OID3300003819 Open in IMG/M
Scaffold IDGa0007878_1007092 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074375Metagenome119N
F075662Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0007878_10070921F075662N/AMYLCVPGSLLNYHEGVGTQATSWIPFAWMPVYDEKLAPSRDSSGYNSHTARRVRLEHEALSYVFKDWDARTRDTLQLHWGGKVLRNSKVYLAAVVVDHPQLDKFVGGGKYTPSHVHNET*
Ga0007878_10070923F074375N/AMYYVEHHVFLFTELEVLLAMVGAAATRLKQRLDLIYRNRSDDDGRKFSGAHETVLPLCSAARSIFNQLRKSTTVKASKKRVSSGAASKINGRPDGRITGMDMRHILLLLPFLLF
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