NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007875_1000271

Scaffold Ga0007875_1000271


Overview

Basic Information
Taxon OID3300003823 Open in IMG/M
Scaffold IDGa0007875_1000271 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7634
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0007875_100027111F009462AGGAGMQVEQLHESVKNTYKEMVIKEHAGFRLVLKKHEVISPKGLFALDLEQQHLKDGEVVDSCTYNFFMDKEELQALAYGLTA*
Ga0007875_100027113F026556AGCAGLVSLSLGGVLEMASLTGSIVKLIFGIALILIAVIFGPIVGIWSLNTLFPVLNIPFTWQTWLAFNCLFGGTIASRLKK*
Ga0007875_100027116F070810AGGMETTNTVWELRIPWHNQDNNWWNETCADVVAVFGLPGERYTYHPRYEDMAFYFNSKKDYQLCKILLSDRI*
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