NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007875_1000356

Scaffold Ga0007875_1000356


Overview

Basic Information
Taxon OID3300003823 Open in IMG/M
Scaffold IDGa0007875_1000356 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6784
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F030331Metagenome185Y
F051640Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0007875_10003563F030331AGGMSKKITLTSGATVTXKDAEDLKVKDRNRIMRAGDKGTDAEKGIAIGNALLTTIIKEWSYDFLIPSVKEESXEELPIKDYVELMKLTEDLTKDLFPDLADSDKNRLNPDSPLDGSNA*
Ga0007875_10003566F002722AGGAMSVGRTQLRSTLYSYLVGATIPTLNQIFTSFPKRINFQINAQPGQLSRSACVIFIQSERETRLAIGGATSGWKRVDFTVVLQLFHHSVQNNAEDAMTDFDTLVDNIKNTLRASHNFGDATQVNVWQGAEPAIDCLYGEPVTSDNGATETWAEIRFDVTQMIQA*
Ga0007875_10003568F051640AGGMGRLVPRDGFAKEVEIKRQSGSKVLRAGKNGIYNVENPKDIKALKAEGFTEGNLALHTHGDSDRGYTCTNCGFGSWFIKCSRCGHESSAPKKDGD*
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