Scaffold Ga0007875_1003080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007875_1003080

Scaffold Ga0007875_1003080

Overview

Basic Information
Taxon OID	3300003823 Open in IMG/M
Scaffold ID	Ga0007875_1003080 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2269
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007875_10030803	F080791	AGGAG	MATYQYNGDDVQEXPTLGLTVKPGDTFESKDEVISANVTLASASKKTTPAPSAAPDTTVGE*
Ga0007875_10030804	F002722	GGA	MAVGRTQLRSTLYNYLVGASIPTLNQIFTSFPKRINYQVNAQPGQMSRAAVVIFIQSERETRLAVGGATGGWKRVDFQVILQVFHHSVLNNAEDAMTDFDTLIDNIKNTLRASHNFGDTSQVNVWQGAEPVIDCIYGEPTTSESGATETFAEIRFDVTQMIQA*

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