NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056137_1004438

Scaffold Ga0056137_1004438


Overview

Basic Information
Taxon OID3300003829 Open in IMG/M
Scaffold IDGa0056137_1004438 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type G CAVOLI
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012932Metagenome276Y
F022774Metagenome213Y
F040380Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0056137_10044382F012932GGAGMVWKVVIERVTVIKFRMDNGGGNGAGCFEVEIWADTAKFTNVIVAGFRKCRDLVREGKVFIKDKAKVASRVGCSERRVVNFRKLLFKSDKKKLSFRRVESKKVCSHPGRDLL*
Ga0056137_10044383F022774GAGMLVTVGTRSAEHSLRSQVGMGSESDCLLGQLNRILEISDSEAGLKVEKSGGVIGEVGECGDADVELLARERRSLDILSVKKEARLSARALAEVEVGRGEEDLRCKSLFIVCQRRRGLSEEEETRLA*
Ga0056137_10044384F040380N/AMVAVTKRFESRPIKSRVGAFPDVFGMMNGRFKGTESRSEPRVRFRLAAGKSGYYWCVFVK
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