NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058699_1003966

Scaffold Ga0058699_1003966


Overview

Basic Information
Taxon OID3300003845 Open in IMG/M
Scaffold IDGa0058699_1003966 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - At.P.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)20.6863Long. (o)-101.8747Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103986Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0058699_10039663F103986GAGMVLVVCXRVNYISDEDPNLAKVSSDLLHQPCLMARDGQVRYDGEEVPAVAVAERSSSSPYSRSDIKDTPLDGLLGKGMVMNEGLQDFLLPLDLKNTIALSLVS*
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