NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055582_1041616

Scaffold Ga0055582_1041616


Overview

Basic Information
Taxon OID3300003847 Open in IMG/M
Scaffold IDGa0055582_1041616 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)767
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)53.9944Long. (o)6.8905Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018541Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0055582_10416162F018541GGAMYNPKMRSFWVDFPLTDEQYSRLEIRWRRRQNFYEIKNEPPPGIRIRSFCSFGGEDYKILSLEARGDIDAYNDTLKIMDKWIIDNLGEY*
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