NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0031658_1008145

Scaffold Ga0031658_1008145


Overview

Basic Information
Taxon OID3300003860 Open in IMG/M
Scaffold IDGa0031658_1008145 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1801
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086684Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0031658_10081451F086684N/AMAALPPALLELRDIVLPLVGMSNVGAIANRQTSQFIALHGLTSIDDFNMVEPHQAKDLIKQSSTRHPAQAMGILVQNNLTGLIWYVKDRARRGLPVDPNNVVLDDLRRGHLAYEAYVQNRDKGENIKALEKWCDKFEFDDWDRKVTETLSLIYGRNYCSIAYVIRPDKPAGWDPAVDAVNDYERLMYQLPLNGIAFEQDNETVFSLIQLAVVHTQAETWIYDHVAGRDGRGAMRALRSHYEGEAELDVQASKAQQVLDTLVYTNEKTMTFEAMITKLNKAYNALKRQGQEFTEKSKVEQLAKRIKNPTKDVQITVAVETMREAHKADYTAATQYITARMAQINSASINAPGTNARRVSEAQTGGANTFTDADLARNEWNGVVLMLIWHVTSGTGSMYVTLGGSLPTTSGIPSLGGVDKH*
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