NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063282_1014805

Scaffold Ga0063282_1014805


Overview

Basic Information
Taxon OID3300003878 Open in IMG/M
Scaffold IDGa0063282_1014805 Open in IMG/M
Source Dataset NamePlastic marine debris microbial communities from the Atlantic Ocean - SEA_0142_20120611_metagen
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)731
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Plastic Marine Debris Microbial Communities From The Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)39.978Long. (o)-68.882Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005454Metagenome / Metatranscriptome400Y
F007772Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0063282_10148052F007772N/AMCTKSYTLLKISWRLYDKHYTKLTDEQRSNVLDIYYDFY*
Ga0063282_10148053F005454N/AMRIIKHFNPHFPERETYKCTIRYTTKFGSLDEVNQWRDDQLKNEDYYKSLEESNTKAAGVFYQTLTYKGD*

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