NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063162_1045994

Scaffold Ga0063162_1045994


Overview

Basic Information
Taxon OID3300003890 Open in IMG/M
Scaffold IDGa0063162_1045994 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments → Hot Spring Sediment Microbial Communities From Chocolate Pots, Yellowstone National Park, Wyoming That Are Fe(Iii) Reducing - Cp Core 3 , 1Cm

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.427936Long. (o)-110.588466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003912Metagenome / Metatranscriptome462Y

Sequences

Protein IDFamilyRBSSequence
Ga0063162_10459941F003912N/AAPAPMRYASILRCIGQSVEAMDLKAIEVRTHGDDFIVQAWHRGTSMAMDLEKHYTPEEIRKLEAEGRKRRRPFAGPPNLLSLSQVLRWGGNYVDRMGGRLLRVSWQDQSDRIQSLTVQWEAVQPGKPTGESQTATVDELCIHIYKRRKKINLVTERQARRPFVSVSRT

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