NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063011_10000795

Scaffold Ga0063011_10000795


Overview

Basic Information
Taxon OID3300003891 Open in IMG/M
Scaffold IDGa0063011_10000795 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing sample CP Core 1 1cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35062
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (97.96%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments → Hot Spring Sediment Microbial Communities From Chocolate Pots, Yellowstone National Park, Wyoming That Are Fe(Iii) Reducing

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.427936Long. (o)-110.588466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088353Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0063011_100007953F088353AGGAGGMALPMSNSELDIALRERWEQVYHNLHDLVMLYNAYLPISATEMFLSEYTLPEGYTISADGTQVLDASGQPDAALTAALYRCNLRKSALTAARALQAMLTNDNLQGLGADHNFFVKQFMRWRFRFFG*
Ga0063011_1000079548F088353AGGAGGMALPMSNSELDIALRERWELVYQNLHELVMLYNAYLPISATEMFLGEYTLPEGYTISADGTQVLDAGGQPDDALTAALYRCNLRKSALAAARALQAMLTNDNLLGLGADHNFFIKQFMRWRYRFFG*
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