NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063011_10002237

Scaffold Ga0063011_10002237


Overview

Basic Information
Taxon OID3300003891 Open in IMG/M
Scaffold IDGa0063011_10002237 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing sample CP Core 1 1cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85106
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments → Hot Spring Sediment Microbial Communities From Chocolate Pots, Yellowstone National Park, Wyoming That Are Fe(Iii) Reducing

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.427936Long. (o)-110.588466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F012730Metagenome278Y
F039930Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0063011_1000223734F039930GAGMCKRRRLPLTLSELVRMLGDFAEIAVTILLAYVVLKIAHLIDTLNSRIKAEKTA*
Ga0063011_1000223759F012730GGAGMKGKTFTEIRVEEKLCEVCDKPLRTVEKTLKTLQIADYESYSNLLTRQRAHDRVEVDLEENKIYVYHHDYPGEVHQNCVEKL*
Ga0063011_1000223762F006410GAGGMVEKLKVSPEKQKEMQERAKERNLILKEIKSQGPSTLDDLVKTTGIEKEKLFKHIIAMRQFGKIAIAGERDNQLVYGLPEGEETSKQ*
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