NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0063241_1016558

Scaffold Ga0063241_1016558


Overview

Basic Information
Taxon OID3300003894 Open in IMG/M
Scaffold IDGa0063241_1016558 Open in IMG/M
Source Dataset NameMarine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4048
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location
Location Namenorthern Gulf of Mexico, LA
CoordinatesLat. (o)28.7167Long. (o)-90.8333Alt. (m)Depth (m)16
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015345Metagenome / Metatranscriptome255Y
F023365Metagenome210Y
F086311Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0063241_10165581F023365N/AMANLGEITEIVNASELTLEVGSDNYILLSDLSIHIGRTESRDVVTSGEPLYSYGSGDNYFTATLLVSTPELSSLNTLTQINGNGDMTSTAWKIVAKNVSGNTKTFAATGILRDYDVSKPSEGKVSIDIFVRITGDTISIT*
Ga0063241_10165582F015345N/ALTTVDLFAIKQRVVEILKSDTTNLWDSTPSSRTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSQVAIVENNVNLGQEYDIRLKLLFVVEAKDGQKTEEDIDDFTKSIIEKLENNYDLRAVGGAESTRLAEASHVTQVIDLPTMFRGDRVKGRVLKFRVIVRT*
Ga0063241_10165583F086311N/AMANGTEITIQSEDVGTIIKGTAKSRSGDTDTIIDLNDVTAITIYLRDPDGELSNHTATAVNVDGGTDGIWSFTTSSAIFSRNPGIWYIQAKYALAGGTVFYSNIKTLNVGETLL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.