Scaffold JGI26657J51804_10112770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26657J51804_10112770

Scaffold JGI26657J51804_10112770

Overview

Basic Information
Taxon OID	3300003905 Open in IMG/M
Scaffold ID	JGI26657J51804_10112770 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	774
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Max Planck institute for Marine Microbiology, Germany
Coordinates	Lat. (^o)	53.109679	Long. (^o)	8.847516	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023796	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26657J51804_101127701	F023796	N/A	VLLAVKSSALTLTHVIPSHGKVNVGAVTSLDDDVFVLRHNSHQIEVYDAETFTLQRHLAVSEIGPRTNSITACARNKCVYLSEERSSCVHRVELSGRKTVKNWSVARGPTGLSVNNAHNLVVTCSGANKLQEYTNQGTLVREISLQGGLTSPWHAVQLSTGDYVVSQNTSSGVVSVVGVGGEVKYSYGQSQTSEIGKMKSPRSLAVTS

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