NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26085J52751_1023837

Scaffold JGI26085J52751_1023837


Overview

Basic Information
Taxon OID3300003908 Open in IMG/M
Scaffold IDJGI26085J52751_1023837 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023826Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
JGI26085J52751_10238371F023826N/AINEVATIWADEYDAVVKRGKDLLNLESVQKGNKDLAKALFQIALLKGLATPPGTNFSLVNEFGNGVKAYWMGAQMNPFPVPLIPAPGTIQNIVVNSNIATNPGTWPMYPPLKPASKQVIMVNMFILAATVHLFSVGGXIQTTSLYPSAPSPIPSPAXISWTAYXIPPNIPIPNINFPSSDGSEPPVLEQVVNDDISTLTPSPQYVDSDVDILGNPVITPTLTDVIDETIPDDVIDGEMENILPDFISQLEMGGTKCE*
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