NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063588_100100

Scaffold Ga0063588_100100


Overview

Basic Information
Taxon OID3300003968 Open in IMG/M
Scaffold IDGa0063588_100100 Open in IMG/M
Source Dataset NameEnrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39860
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60544
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (52.83%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079646Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0063588_10010036F079646GGAGMTNFVSRCLVAPLSALAFAALLAPSTASAQSGKWVGTVNQIRTAGGSADFTIDPRNEKQSRVKVTVRNVNRDMRIAWDIVEGQCRDNGAPIAPQATFTQIQSQMDGGGTATANVPKLVSGKNYYVRIFDPQNSPTDDNVWGCANISEKP*
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