NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055475_10024648

Scaffold Ga0055475_10024648


Overview

Basic Information
Taxon OID3300003988 Open in IMG/M
Scaffold IDGa0055475_10024648 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1666
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)37.928627Long. (o)-122.504829Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081030Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0055475_100246482F081030N/AMSDFDQGLLRTFALLAAGLIGAWTSWACHRAHQRGIPGGDAVIWAGLAAVFSAYAHVRLARELGWLDGWGGWLRTLAREHNLYADRRMFQVFVSIAIAVIAIGLLLYGLIWFWHYIKRYRLAIGFAAFAIGYALIRFVSLHEVDAWNAANPWAPLTAELIAAVGASAVALARLHQLKEFARLQGSN*

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