NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055460_10073612

Scaffold Ga0055460_10073612


Overview

Basic Information
Taxon OID3300004011 Open in IMG/M
Scaffold IDGa0055460_10073612 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.197227Long. (o)-122.010124Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013930Metagenome / Metatranscriptome267Y
F056119Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0055460_100736121F056119N/AMTLRSVVGRVRLEVDHGQDPQDKHWGCPIREEWGLSAHQQMSPALEQKLAFTSTLVGSYEAAGQEAANWNCPVDDAVIHALVQRLGRKAEAQTQARLQQAPQESQPQRRPAELALLMVDGWFARFRGPGWGKKRTQKERVEWHEIKNGVFYLHEQSARTEGGRGVITDKVVVRSQGDPTDLGQRLHWEALRGGLGRAEETLVLGDGIA
Ga0055460_100736122F013930GGAGGLVPHPSRATINLTKGLMISDNDRPRSLREIELEVLEEGREWTRRRLEQRLQEEADRQGGVFPPQPPQDPSPAKADHDAEKRRRSGQAGG*
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