NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062385_10409616

Scaffold Ga0062385_10409616


Overview

Basic Information
Taxon OID3300004080 Open in IMG/M
Scaffold IDGa0062385_10409616 Open in IMG/M
Source Dataset NameCoassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018767Metagenome / Metatranscriptome233Y
F048444Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0062385_104096161F018767GGAGGMQKAHLYEAILLVNRGVDEAVRGLERLKRAKDSQLDSSCFDNELVLLEDHRARLNSYFCSTIQRPEQQDPVRFESRYCEFEKSTLDEVQVYRDVGMVEDRRRIEGKPPKVQFFTPEEQREWERQYPKPPCDAQNEPQSSEGDQP*
Ga0062385_104096162F048444AGGAGMKLALFQELVDLNRAFEEVIRGLSRMQKGRHFQRDLIRYARADVEIARVDANREFFDNFEALVENDASWAYRFQREYKQKAKDPDDIYFDIKDSEERRKKKGLPPRIVILPGWDFND
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