NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062384_100010722

Scaffold Ga0062384_100010722


Overview

Basic Information
Taxon OID3300004082 Open in IMG/M
Scaffold IDGa0062384_100010722 Open in IMG/M
Source Dataset NameCoassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3520
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001734Metagenome / Metatranscriptome644Y
F008261Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0062384_1000107222F001734GAGMRLRFPSLRLIAPGLLVFAMLLPSAAVAQDDAPSLGDLARNLRKNKSEQQPQQPSGPTSPMIDNDNLTQVMDDARNARPVKQNRTVFSIDPSGSTVKVSSPDVTCNLSFNAQASSLLIKPILIEDLPLTELLKLDGPGSIQDENLQLEVFNGTDWDIREITIGLTLERKPGENAELAARARVIPAAEGLAPSTITVERRSDVTLLYHLKAEAKPFSTTALHEDIGITPGPDEDWRWSIVEAKGIRPSQAQSAPDALQEPLFAVPSSLMPDSDGPKLPPISPVIPDKPAQDRPSLEKPRNASPTPQH*
Ga0062384_1000107223F008261GGAGMKLWHLAYAALGIAVARWVFKRQPMQVTDPITRFRRSGLL*
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