NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066183_1001982

Scaffold Ga0066183_1001982


Overview

Basic Information
Taxon OID3300004089 Open in IMG/M
Scaffold IDGa0066183_1001982 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041788Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0066183_10019821F041788GGGGGMRKWLRVLLVIVLFPIAVLLSNHSDPVVTDERGAFVCSAARSASGIWYTAEHCLTNGRLYVDGRDTPYAHLLGDIIQIGSGARRADKGVLTADRVRAGMKVKVRIGGLSRLTEKPTYFDVETKILAVYSSADLKYVLDAPDDAGWYALVHLGAFGGCSGSGVYYRGRLIGVVVAGIAGEYTFVALIPPANVGGGTSAVQKQGADA*
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