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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004091 Open in IMG/M |
| Scaffold ID | Ga0062387_100000343 Open in IMG/M |
| Source Dataset Name | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9364 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000703 | Metagenome / Metatranscriptome | 928 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F006229 | Metagenome / Metatranscriptome | 378 | Y |
| F017007 | Metagenome / Metatranscriptome | 243 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0062387_1000003432 | F006229 | N/A | MQLKGNSMATATENSTVSLVNISTEKWPPRHRTYFGSLLVRSPESGEAFAITPIRGCMAAMDLGDKRIMEVRITAQEVAEDIARELNGDSGEGSFHGVFVAAGPTPTEAELADARRRLEEFQERLVAAADLEWERTRNPMFITDLERRAARQLNLEKPWLYDPKPLAECPVCAEKIKHGVAVCRSCGAILDCEKAAQYGLVAPEKPRGGTSTNQDRAGKQPHEAGK* |
| Ga0062387_1000003434 | F000781 | AGAAG | MLTVAQLAPIKNRDPYLYETLTKIVASVNATSQAAGVDPATPAPAPTAVASINVQASNGWFDLSVTDPSDARPGLFYFAESDTTPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVAGGGTTGPTPLPSSGSGVLPNGLLRGGNGFGVNPGSRITRNVVL |
| Ga0062387_1000003435 | F000703 | N/A | MLVREYRESDLAALRAIHGTQGFGYAFPDLSNPLFVTKLVISEQEEGTKGEECAAPEKIVGAALLRLTAEAYLLLDPNAGTPRDRWNGLLHLHAAAERDAWQRGLEDVHAWLPPPIAHKFGRRITQLGWNRDDAWTPYCKRLSCIPGTPGIS* |
| Ga0062387_1000003437 | F017007 | N/A | MSALQGLSGLYGVDSNLLGKTLGIPSQLLNVRANAGRSGNGFFTSLGSGLGSNLGALPTTLLG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |