NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062387_100004419

Scaffold Ga0062387_100004419


Overview

Basic Information
Taxon OID3300004091 Open in IMG/M
Scaffold IDGa0062387_100004419 Open in IMG/M
Source Dataset NameCoassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4460
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y

Sequences

Protein IDFamilyRBSSequence
Ga0062387_1000044194F000696AGGAGMPVVGSSAYNTAGQITSLVRSLLNDAPGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNLSTDDFLEMVDLTQHGGLPSRVQDVTLSIWEWRADGIYFIGATQDTQIRLRYSKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDEAAADAIEDLVSAAVRREQQSQRRRRPFSARSGYTPF
Ga0062387_1000044195F000739N/AMKRLEIWLRGIVAAAISGGAGGVLTGLAAVGIDPQHFNLQTGMAATLRIGAAAALINAVIGVAAYLQKSPLPNSE*
Ga0062387_1000044196F000512N/AMIKVLREIYDAPEAIAQLLKRAGGINRFGQANYRAMWGWNRLAWIGGKFEEHDPATGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRAWYAQTIERANGVSIPALGPYPSRGEYEHCFTLEGPSGEFVQLTPTVAEHIARAIEFSRHAPRSLKRRSIDNREQREERAYDAWAYDTLDDATPAFHKQPFVTVG*
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