NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062387_100017373

Scaffold Ga0062387_100017373


Overview

Basic Information
Taxon OID3300004091 Open in IMG/M
Scaffold IDGa0062387_100017373 Open in IMG/M
Source Dataset NameCoassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2880
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002138Metagenome / Metatranscriptome590Y
F053586Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0062387_1000173732F002138N/AVSLRETFVENFAGDLEYHPRRAVVYVILAVAAFCFWIFSPSQSQFTTIPLVFALGSLTLLIKGIFLMRKSSEGLGLSDKELARLSDSSSRKSLPSIVGQASQVVQDFGTGLFLLWPLLNIGKDIDKSWSDPPLFRVFLTGAILFLFGWALRRAASSDKNLSTPG*
Ga0062387_1000173734F053586GAGGMERIYDTLQRIQSLWKELEQKKPDSSEYVALMNQIRALSDDYRALIDAPKKPRESK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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