NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062387_100756156

Scaffold Ga0062387_100756156


Overview

Basic Information
Taxon OID3300004091 Open in IMG/M
Scaffold IDGa0062387_100756156 Open in IMG/M
Source Dataset NameCoassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)719
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000825Metagenome / Metatranscriptome874Y
F027638Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0062387_1007561561F000825GGAGGMRRWMLAALAGAALTTAAMPAQAAWKTYVNKELGFSFMAPGEVKTDVGTFRGNYAGPRQTIVYRSVEDNIEYKVTVMSFIQAQAEGATILGEREYMFQDGKGKKVLADTFGRVGSGKDAIYGRKIVVDLPDDKGRATGAFYFTKGRLISLEATVL
Ga0062387_1007561562F027638N/ASAAFYFINGRIVSLQATVLPANGDYGTPEMGRFVDSITFFTVRAGDDAIELPAPPK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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