NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0062389_100002092

Scaffold Ga0062389_100002092


Overview

Basic Information
Taxon OID3300004092 Open in IMG/M
Scaffold IDGa0062389_100002092 Open in IMG/M
Source Dataset NameCoassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11153
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F006229Metagenome / Metatranscriptome378Y
F064567Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0062389_10000209210F064567N/AMSVAPELVVLAKRNAISFALDPALVCAVVEQESAWNTFSMRFEPAFFAKYVASLYTNNKVTASEAYA
Ga0062389_1000020922F006229AGGMPAAVATETAALINISTEKWPPRYRTYFGSLEIRSPQAGESFAITPVHGCLGKIDHGDKHITDFPITAREVAEDIARELNSDSGEGSFHGVFVAEGDVPTPAELADARQRLETFHRRLVDAADLEWERTKNPMFITDLERRAARLLGFEKPWLYDAKPLADCPVCAEKIKPGVAVCKSCGAILDREKAAQYGFIAREGRAAAHTKRTQETHDAGK*
Ga0062389_1000020924F000781N/AMLTVAQIAPIKDRDPYLYEALTKIVAAVNASSQSAGVDSSTPSPAPSPIASVMVQASSGWFDISITDPSASRPGLFYFAESDTTPAFNAPRVYFMGASRNLYTQLGNQTLYWRVYSQYIGSQPSAPVSFGSPPTAVVGGGSAGPAPLPSSGSGALPNGLLRGGNGFGINSGARVVRPTIL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.