NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065166_10017233

Scaffold Ga0065166_10017233


Overview

Basic Information
Taxon OID3300004112 Open in IMG/M
Scaffold IDGa0065166_10017233 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2070
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025754Metagenome / Metatranscriptome200Y
F073240Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0065166_100172331F073240N/ALNFLLNADRETMEDWYHMATEDDFKYAAELFRRARTELAMTELALVDDEAVEDMTEAQAVLARFRL*
Ga0065166_100172334F025754GAGMYFYILPGPYRLGFGITSNHERRAKDYTGAWGGEAEFKYLFEGPTAHVKRLENIIKTIHRDMLWRLDEWQTEWLDNGWSAEQLLDFVKDIVQERHLKVIQIR*

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