NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065166_10033423

Scaffold Ga0065166_10033423


Overview

Basic Information
Taxon OID3300004112 Open in IMG/M
Scaffold IDGa0065166_10033423 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1617
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F010760Metagenome / Metatranscriptome299Y
F099274Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0065166_100334232F099274AGGAGMAQVEGQTVKVGDYVSFKSDIEQGGQIYRIEGNRLFLKAGPNGFDGDYIGGAETTVQLAQDCWIEG*
Ga0065166_100334233F004978AGGMITADTLEVLTSYSPQFLTRAAQNAGYKGPEFTSCKFLGITNGGQFCYMAVFQVKGGTDSTKIFLSYDHAEDKVIADYHLTEVF*
Ga0065166_100334235F010760AGGAGMLDVSKIVKVYNGKLGCMCGCNGKYSYTADGAENFGPGYDVTDSVNERSVRIITKKILANPNVQFEGDYAFVEDRARNKIQVVYFKEQA*
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