NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065166_10109303

Scaffold Ga0065166_10109303


Overview

Basic Information
Taxon OID3300004112 Open in IMG/M
Scaffold IDGa0065166_10109303 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1015
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0065166_101093031F012862N/APSRSMVPAPKGKRRHMFANKAAVMEAGLPLVIRPKNAERLVFEYNGETVFMPKGASVTVKRPGGSAARNQFSLAHSRFFSGRLVNESIKKSGFQKIFNSSMTKALSVPSDIKKVQYSFSPNTIKSQADSALSLAFGGVM*
Ga0065166_101093032F000258GGAGGVTANYKLDAMIELRKYLWKELHTRNIFDQDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTSVSEINEIRNYMTDEFRRMDESARDINKWADLSDKFKFHTVWVADISPTAPSEEIQGFFSAEVILEIKYSRITDGQGRFL*
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