NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065183_10261538

Scaffold Ga0065183_10261538


Overview

Basic Information
Taxon OID3300004113 Open in IMG/M
Scaffold IDGa0065183_10261538 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)770
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)53.9944Long. (o)6.8905Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058153Metagenome135N
F072361Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0065183_102615382F058153GGAGMARFDFYEILINYPTWEENHHDITDLNIRRDIMLDVEEISSELAPTAMHQVGSELEWVDLVFNDEADPLLVVETTRALLWNYSESMIVDLIEAEAAKHAEAYDD*
Ga0065183_102615383F072361GGAGGMIDLSKSDETFLSERFKDYLTVASRDFRRGFTDGVACNDQAYPATDTYLSGYADGYALTQMRQASQHAGETL*

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