NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066179_10014987

Scaffold Ga0066179_10014987


Overview

Basic Information
Taxon OID3300004126 Open in IMG/M
Scaffold IDGa0066179_10014987 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035630Metagenome / Metatranscriptome171Y
F037069Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0066179_100149872F035630N/AVKKKIVVRDESSASNADVPVIPSQLKVTHQILSHWEPFRDLKARFADSRRAEQLSLRSQQRIVATVEDSVLRTEMAGLESLEEDAPKRILFYTPMGWLGQIRSHRRDEAWSASIWQTFFATAMGAQIPVISEKPLAACGCRKFQIDPLGDHISTCNSHSGAKKAHDWAVDQVADLFRTTHKVKTQQVIRSRGQHCGDIELAGYLANQAGPVPLVLDLRITHERFGRSSDLSINGNLHYTK
Ga0066179_100149873F037069N/AMETYITLNEAADDKILKYRADYDNNPPISVAFMPVIASTSGRLHSEFIRLLFLQAHRETDRFFAASGVQSAQPNSGGIFHFKRAAFLSQLKAKVGSSLAKAAAMRVNLNIDGAPITSCSHTHPSHSQASRLLTSSLSLG
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