Scaffold Ga0058897_11105387

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0058897_11105387

Scaffold Ga0058897_11105387

Overview

Basic Information
Taxon OID	3300004139 Open in IMG/M
Scaffold ID	Ga0058897_11105387 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2515
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.531427	Long. (^o)	-72.189946	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005560	Metagenome / Metatranscriptome	396	N
F054748	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0058897_111053871	F005560	N/A	VASGTTTYKRMFLRWEILRGWMPAIVFAAVAVAIELLYFNYMVSRGLIDEAFTISLGALRIPLSIALFVSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVRAAAIVLTPFTIVLFTPYIVESSWFISAVASASNAVPSLRQTAVNFYTWSFGLARMDYSVKFVVSQLSAAVSSTVVSGLLLWRVKGTRNLMLALRRKK*
Ga0058897_111053872	F054748	AGG	MTTEDTPTPDASSKRLTEVILKGEEQDAARIAGEIASGNTQTNDLVDAISETMNIVADLHDVERYTVQQVESCERAAESALNAIRPGLKVEKRKIKGRVMVTSLHGDPHTFDKTLLLTMLELGGFSALDGGEELSPEEVVRNVKSLKPDVLAIPLVTASAVNDLLRTRSLLANSGVKTKLVTYGRGVVKLPSDSQFTAMEEDSLSILSRIAEILIAL*

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